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12 Tax Deductions Every Foreigner Working in Japan Should Know

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If you’re a foreigner working in Japan, taxes are automatically deducted from your monthly salary, and your company pays them on your behalf. This is called “gensen choshu” (withholding at source). While it may seem difficult to adjust your tax amount since taxes are deducted before you receive your salary, understanding Japan’s tax system can help you reduce your tax burden and increase your take-home income.

Important Japanese Keywords

年末調整 (Nenmatsu chosei) Year-end tax adjustment

源泉徴収 (Gensen choshu) → Withholding at source, direct deduction of taxes from your salary

For detailed information about taxes and insurance premiums deducted from your salary in Japan, please check our related article below↓↓

As a foreigner working in Japan, the best way to reduce your tax burden is to take advantage of the tax deductions available to you. Before introducing the 12 types of tax deductions that working foreigners can utilize in Japan, let’s briefly answer questions like “How are annual net income and tax amounts calculated for workers in Japan?” and “What’s the difference between deductions applied to taxable income versus deductions applied directly to tax?

How Are Annual Net Income and Tax Amounts Calculated for Workers in Japan?

To calculate the tax amount you will pay as a foreign worker in Japan, you first need to calculate your taxable income. Taxable income is calculated by subtracting the available deductions from your total salary. These deductions include the social insurance premiums you pay.

How to Calculate Employment Income?

給与所得 (Employment Income) = 給与収入 (Salary (Gross amount)) – 給与所得控除 (Employment Income Deduction)

How to Calculate Taxable Income?

課税所得 (Taxable Income) = 給与所得 (Employment Income) 所得控除 (Income Deductions)

After calculating your taxable income, you can calculate the tax amount you need to pay by multiplying it by the tax rate. This tax rate varies from 5% to 45% for income tax depending on your income level, while residence tax is a flat 10% for everyone.

How to Calculate Tax Amount?

所得税 (Income Tax) = 課税所 (Taxable Income) X 税率 (Tax Rate)「%5~45 」

住民税 (Residence Tax) 課税所 (Taxable Income) X 税率 (Tax Rate)「%10」

Your annual net income is calculated by subtracting the total tax amount and social insurance premiums you paid from your salary.

How to Calculate Annual Net Income?

手取り (Net Income) 給与収入 (Salary (Gross amount)) 所得税 (Income Tax) 住民税 (Residence Tax) 社会保険料 (Social Insurance Premiums)

If you understand the calculations above, let’s move on to the answer to our next question.

Important Japanese Keywords

所得控除 (Shotoku kōjo) A deduction applied to your taxable income

税額控除 (Zeigaku kōjo) → Discount applied to the total tax amount

What’s the Difference Between Deductions Applied to Taxable Income and Deductions Applied Directly to Tax?

Deductions applied to taxable income reduce the amount of taxable income that will be multiplied by the tax rate, which in turn reduces the amount of tax you need to pay.

Deductions applied directly to tax are subtracted directly from the calculated tax amount.

From a tax-saving perspective, deductions applied directly to tax are more effective. However, the types of direct tax deductions available to company employees are very limited. In this article, we’ll introduce the mortgage loan deduction as the most commonly used direct tax deduction.

Note that the Furusato Nozei tax deduction we’ll introduce in this article is a special type that combines elements of both income deductions and direct tax deductions.

Now, let’s look at the 12 tax deductions available to foreigners working in Japan. Find the ones that apply to your situation and increase your take-home income!

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1- Employment Income Deduction

Important Japanese Keywords

給与所得控除 (Kyūyo shotoku kōjo) Employment income deduction

This deduction is automatically applied to everyone with employment income, including foreigners in Japan. It’s calculated as shown in the table below.

Total SalaryEmployment Income Deduction Amount
~¥1,900,000¥650,000
¥1,900,001~¥3,600,000Total Salary × 30% + ¥80,000
¥3,600,001~¥6,600,000Total Salary × 20% + ¥440,000
¥6,600,001~¥8,500,000Total Salary × 10% + ¥1,100,000
¥8,500,001~¥1,950,000
※Based on National Tax Agency data
What you need to do to benefit

No action required. Your company will automatically apply this deduction on your behalf.

2- Basic Deduction

Important Japanese Keywords

基礎控除 (Kiso kōjo) Basic deduction

This is a deduction that all taxpayers (including foreigners) living in Japan can use unconditionally. It’s calculated according to income as shown in the table below.

Employment IncomeDeduction Amount (Income Tax)
~¥1,320,000¥950,000
¥1,320,001~¥3,360,000¥880,000
¥3,360,001~¥4,890,000¥680,000
¥4,890,001~¥6,550,000¥630,000
¥6,550,001~¥23,500,000¥580,000
¥23,500,001~¥24,000,000¥480,000
¥24,000,001~¥24,500,000¥320,000
¥24,500,001~¥25,000,000¥160,000
¥25,000,001~0
※Based on National Tax Agency data

If your annual salary is ¥1,600,000 or less, you don’t need to pay income tax!

Calculation example:

  • Total Salary (¥1,600,000) – Employment Income Deduction (¥650,000) = Employment Income (¥950,000)
  • Employment Income (¥950,000) – Basic Deduction (¥950,000) = Taxable Income (0)
What you need to do to benefit

No action required. Your company will automatically apply this deduction on your behalf.

3- Social Insurance Premium Deduction

Important Japanese Keywords

社会保険料控除 (Shakai hoken-ryō kōjo) Social Insurance Premium Deduction

The amounts deducted from your salary as social insurance premiums are fully deductible from your taxable income for foreigners working in Japan.

For detailed information about taxes and insurance premiums deducted from your salary in Japan, please check our related article below↓↓

What you need to do to benefit

No action required. Your company will automatically apply this deduction on your behalf.

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4- Spouse Deduction

Important Japanese Keywords

配偶者控除 (Haigūsha kōjo) Spouse deduction

配偶者特別控除 (Haigūsha tokubetsu kōjo) Special spouse deduction

Foreigners working in Japan can also utilize the spouse deduction. This deduction is available when the taxpayer’s income is below ¥10,000,000 and the spouse’s income is below ¥580,000 (or total salary below ¥1,230,000 if employed).

Taxpayer’s Income  Deduction Amount
Under 7070 and Over
~¥9,000,000¥380,000¥480,000
¥9,000,001~¥9,500,000¥260,000¥320,000
¥9,500,001~¥10,000,000¥130,000¥160,000

Even if your spouse’s income exceeds ¥580,000, you don’t completely lose the spouse deduction. The deduction amount varies based on your spouse’s income. This is called the Special Spouse Deduction, calculated as shown below.

Spouse’s Income/ Taxpayer’s Income

~¥9,000,000

¥9,000,001

~¥9,500,000

¥9,500,001

~¥10,000,000

Deduction Amount
¥580,001~¥950,000¥380,000¥260,000¥130,000
¥950,001~¥1,000,000¥360,000¥240,000¥120,000
¥1,000,001~¥1,050,000¥310,000¥210,000¥110,000
¥1,050,001~¥1,100,000¥260,000¥180,000¥90,000
¥1,100,001~¥1,150,000¥210,000¥140,000¥70,000
¥1,150,001~¥1,200,000¥160,000¥110,000¥60,000
¥1,200,001~¥1,250,000¥110,000¥80,000¥40,000
¥1,250,001~¥1,300,000¥60,000¥40,000¥20,000
¥1,300,001~¥1,330,000¥30,000¥20,000¥10,000
What you need to do to benefit

You can apply through your company’s year-end tax adjustment (nenmatsu chosei).

5- Dependent Deduction

Important Japanese Keywords

扶養控除 (Fuyō kōjo) Dependent deduction

Foreigners working in Japan can claim deductions for family members who are financially dependent on them with annual income below ¥580,000 (or total salary below ¥1,230,000 if employed). Family members in your home country may also qualify if they meet the conditions.

Dependent Family Member StatusDeduction Amount
16 years and older¥380,000
19~23 years (special dependent)¥630,000
70 years and older (living separately)¥480,000
70 years and older (living together)¥580,000
※Based on National Tax Agency data
What you need to do to benefit

You can apply through your company’s year-end tax adjustment (nenmatsu chosei).

6- Mortgage Loan Deduction

Important Japanese Keywords

住宅ローン控除 (Jūtaku rōn kōjo) Mortgage loan deduction

確定申告(Kakuteishinkoku)→ Final tax return

Foreigners working in Japan can also utilize this deduction when taking out a mortgage loan to purchase a home or renovate their house. You can benefit from this for up to 13 years.

How to Calculate the Mortgage Loan Deduction Amount?

Remaining Mortgage Balance × 0.7%

To calculate how much tax deduction you’ll receive each year based on your loan amount, you can use Kakaku’s mortgage loan deduction simulator.

Since the mortgage loan deduction is subtracted directly from your calculated tax amount, it has a more effective deduction effect compared to other deductions.

What you need to do to benefit

In the first year of purchasing your home, you need to file a tax return (kakuteishinkoku) with the National Tax Agency. You can easily do this online through MynaPortal. If you’re unsure how to file a tax return, we recommend consulting a tax accountant or your local municipal tax consultation office. From the second year onward, you can apply through your company’s year-end tax adjustment (nenmatsu chosei) by submitting the necessary documents.

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7- Furusato Nozei (Hometown Tax)

Important Japanese Keywords

ふるさと納税 (Furusato nozei) → Hometown Tax

Furusato Nozei is a system available to residents -including foreigners- living in Japan that allows you to make donations to local governments you want to support and receive gift products based on your donation amount. Gift products range from food and beverages to electronic goods and various regional specialties.

In the Furusato Nozei system, the portion of your donation exceeding ¥2,000 is deducted from your taxes. If you file a tax return, the deduction applies to both your income tax for the donation year and your resident tax for the following year. If you use the One-Stop Special System, the entire deduction – including the income tax portion – will be applied to your resident tax for the following year.

There’s a limit to the tax deduction you can receive based on your annual salary. You can check this limit using the Rakuten Furusato Nozei simulator.

You can use the Rakuten Furusato Nozei portal site to select gift products. This is a great opportunity to get delicious local foods and specialty products from different regions of Japan!

What you need to do to benefit
  • If you don’t file a tax return: You can apply using the One-Stop Special System (ワンストップ特例制度, Wan sutoppu tokurei seido).
  • If you file a tax return: You can receive the deduction by declaring your donations when filing your tax return (kakuteishinkoku).

Of the amount you donate through Furusato Nozei, ¥2,000 is not eligible for tax deduction. This means you need to pay ¥2,000 out of pocket to use Furusato Nozei.

Tax Deduction Amount = Furusato Nozei Donation Amount – ¥2,000

8- Shin NISA (New NISA)

This is a recommended system for foreigners in Japan interested in stock market investing. Normally, you would need to pay 20.315% tax (15.315% income tax + 5% resident tax) on profits from stock investments. By using Shin NISA (Nippon Individual Savings Account), profits from investing in reliable investment funds designated by the Financial Services Agency (金融庁) are tax-exempt.

When you open a Shin NISA account, you have a tax-exempt investment limit of ¥18,000,000 with no time restrictions, and you can withdraw your money at any time. Remember that the longer you keep your investment, the more your profits are likely to grow!

Any foreigner aged 20 or older with an address in Japan can open a Shin NISA account and invest. You can open an investment account and obtain a Shin NISA account through providers like moomoo Shoken (moomoo証券) or Rakuten Shoken.

If you open an account with moomoo Shoken(moomoo証券) now, you have a chance to earn points worth ¥100,000 that you can use to buy stocks.

moomoo証券【WEB】

Also, if you open an account with Rakuten Shoken and make total investments of ¥40,000 from your regular investment account using your Rakuten Card, you can earn Rakuten Points worth ¥6,000.

What you need to do to benefit

Open an investment account and invest through a Shin NISA account.

Investments made through Shin NISA cannot be used to reduce the amount of tax you pay by deducting from your annual taxable income. You are only exempt from taxes on profits when you invest and make gains.

9- iDeCo

iDeCo (individual Defined Contribution pension, 個人型確定拠出年金) is a personal pension system. Foreigners living in Japan can also use it. You can invest through investment funds, insurance, and cash.

Anyone aged 20-60 with an address in Japan can use iDeCo. However, you cannot withdraw your money until you turn 60, which is the biggest disadvantage. Foreigners who may leave Japan in the future should carefully consider this point.

The monthly contribution limit for company employees is ¥23,000.

Tax Benefits of iDeCo
  • You can deduct your annual contributions as an income deduction from your taxable income, reducing the amount of tax you need to pay
  • Profits from your investments are tax-exempt

You can open an investment account through moomoo証券 or Rakuten Shoken and make iDeCo individual pension investments.

What you need to do to benefit

Open an investment account and enroll in the individual defined contribution pension.

While iDeCo provides tax benefits during the investment period, you’ll need to pay taxes when you withdraw your money at age 60. The amount of tax you pay varies depending on whether you take a lump-sum withdrawal or monthly pension-style withdrawals. Also, since you cannot withdraw until age 60, you may face difficulties if you urgently need money or need to return to your home country.

10- Life Insurance Premium Deduction

Important Japanese Keywords

生命保険料控除 (Seimei hoken-ryō kōjo) Life insurance premium deduction

Foreigners working in Japan can also deduct part of their life insurance premiums from their taxable income if they’re enrolled in life insurance.

Annual Insurance Premium PaidDeduction Amount
~¥20,000Full amount paid
¥20,001~¥40,000Amount paid × 1/2 + ¥10,000
¥40,001~¥80,000Amount paid × 1/4 + ¥20,000
¥80,001~¥40,000
※Based on National Tax Agency data
What you need to do to benefit

You can apply through your company’s year-end tax adjustment (nenmatsu chosei).

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11- Earthquake Insurance Premium Deduction

Important Japanese Keywords

地震保険料控除 (Jishin hoken-ryō kōjo) Earthquake insurance premium deduction

Foreigners working in Japan can also deduct part of their earthquake insurance premiums from their taxable income if they’re enrolled in earthquake insurance. Since Japan is an earthquake-prone country, it’s worth considering earthquake insurance coverage.

Annual Insurance Premium PaidDeduction Amount
~¥50,000Full amount paid
¥50,001~¥50,000
※Based on National Tax Agency data
What you need to do to benefit

You can apply through your company’s year-end tax adjustment (nenmatsu chosei).

12- Medical Expense Deduction

Important Japanese Keywords

医療費控除 (Iryōhi kōjo) Medical expense deduction

Foreigners working in Japan can also use this deduction if their out-of-pocket medical expenses (not covered by health insurance) exceed ¥100,000 per year. The ¥100,000 includes medical expenses for you and all family members living in Japan.

Only basic medical expenses such as illness and injury are eligible for this deduction. You cannot include expenses like health checkups or cosmetic surgery in this tax deduction.

The medical expense deduction is calculated as follows, and the calculated amount is deducted from your taxable income to provide a tax deduction.

How to Calculate the Medical Expense Deduction Amount?

Total Medical Expenses (excluding insurance coverage) – ¥100,000 (limit up to ¥2,000,000)

For people with income below ¥2,000,000, the calculation is as follows: Total Medical Expenses (excluding insurance coverage) – “Total Income × 5%”

What you need to do to benefit

You need to file a tax return (kakuteishinkoku) with the National Tax Agency. The tax return can be submitted online through the MynaPortal. You cannot apply through year-end tax adjustment (nenmatsu chosei). If you’re unsure how to file a tax return, we recommend consulting a tax accountant or your local municipal tax consultation office.

Summary

In this article, we’ve introduced 12 types of tax deductions available to foreigners working in Japan. Since there are many deduction systems available in Japan, the more you increase your knowledge about taxes, the more you can increase your take-home salary.

Some things in this article may seem difficult, but don’t worry – Japanese people struggle with this too! We hope the information provided in this article will help foreign residents improve their lives in Japan. If you have any questions about taxes and deductions in Japan, please feel free to contact us. You can reach us through social media or the contact form below. Multilingual support is available.

If you found this article or our activities helpful, we would greatly appreciate your support with a cup of coffee ☕✨

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